PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011494
Common NameLOC102582479
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 476aa    MW: 53303.5 Da    PI: 6.6533
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011494genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544e-17135184155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400011494 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 184
                           78*******************......55*************************98 PP

2AP239.81.1e-12227277155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+ +++a+ k +g
  PGSC0003DMP400011494 227 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARSYDKAAIKCNG 277
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-9135184IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15135193IPR016177DNA-binding domain
SMARTSM003802.7E-31136198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17136192IPR001471AP2/ERF domain
PROSITE profilePS5103217.635136192IPR001471AP2/ERF domain
CDDcd000181.08E-11136191No hitNo description
CDDcd000184.39E-25227287No hitNo description
PfamPF008472.3E-8227277IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-16227287IPR016177DNA-binding domain
PROSITE profilePS5103215.369228285IPR001471AP2/ERF domain
SMARTSM003805.6E-31228291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15228285IPR001471AP2/ERF domain
PRINTSPR003672.6E-5229240IPR001471AP2/ERF domain
PRINTSPR003672.6E-5267287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MWNLNDSPDQ IMEDESDEGI PVRSVSNSSS SAVLVAEDGN SSEEDGERGK KKKSSTPGKL  60
FGFSVNDDNL EPPIVTRQFF PVDNESTNFP RAQWAGIKFC ESEPPLVTGL VGNPIEVSQQ  120
QPIKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI  180
KFRGAEADIN FTLEDYEGDL KQMSNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW  240
EARMGQFLGK KYVYLGLFDT EVEAARSYDK AAIKCNGKDA VTNFDPSIYE NEVNSTECSD  300
NAADHNLDLS LGGSSQEMGD NRGQNSSSNL QLDVHWGHQG SSRLNKPRSQ INFDGQKRSG  360
YNETETLQLL SQTHLNSSGR VQPNINEMQK FGEFIRDGET HMVQAYPRQF NSYQVQTSSN  420
NNVGQIGATS NSQEWHPNYE IITTAAASSG FPQQIIRTQN WSQNNGFHHN FMRPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652ERGKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343193.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotP479271e-124AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM1A7W50.0M1A7W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-121AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]